PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G148940_P01
Common NameLOC103638664, ZEAMMB73_537531, Zm.23621
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family FAR1
Protein Properties Length: 673aa    MW: 76583.5 Da    PI: 8.7742
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G148940_P01genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR167.82.8e-2184176290
               FAR1   2 fYneYAkevGFsvrkskskkskrng..eitkrtfvCskegkreeekkk..tekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHel 89 
                        fYn+YA   GF +r+++s++++r+g    ++++fvC keg+++++k    ++k++r+r + r gC a+++v ++  ++w++tkl+leH+H +
  GRMZM2G148940_P01  84 FYNAYALCFGFGIRVARSRSERRKGveVLVMKRFVCLKEGHHRKKKPVepSNKKKRKRLSIRDGCPAMMEVVRRGPDRWVITKLVLEHTHVI 175
                        9**************9999886665216789*********9998876667899999**********************************87 PP

               FAR1  90 a 90 
                        +
  GRMZM2G148940_P01 176 V 176
                        5 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031018.6E-1984176IPR004330FAR1 DNA binding domain
PfamPF105512.3E-22263354IPR018289MULE transposase domain
PROSITE profilePS509669.087546578IPR007527Zinc finger, SWIM-type
PfamPF044344.5E-7548577IPR007527Zinc finger, SWIM-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0000037anatomyshoot apex
PO:0006310anatomytassel floret
PO:0006339anatomyjuvenile vascular leaf
PO:0006340anatomyadult vascular leaf
PO:0006341anatomyprimary shoot system
PO:0006354anatomyear floret
PO:0006505anatomycentral spike of ear inflorescence
PO:0008018anatomytransition vascular leaf
PO:0009001anatomyfruit
PO:0009009anatomyplant embryo
PO:0009025anatomyvascular leaf
PO:0009054anatomyinflorescence bract
PO:0009066anatomyanther
PO:0009074anatomystyle
PO:0009084anatomypericarp
PO:0009089anatomyendosperm
PO:0020040anatomyleaf base
PO:0020104anatomyleaf sheath
PO:0020126anatomytassel inflorescence
PO:0020127anatomyprimary root
PO:0020136anatomyear inflorescence
PO:0020142anatomystem internode
PO:0020148anatomyshoot apical meristem
PO:0025142anatomyleaf tip
PO:0025287anatomyseedling coleoptile
PO:0001007developmental stagepollen development stage
PO:0001009developmental stageD pollen mother cell meiosis stage
PO:0001052developmental stagevascular leaf expansion stage
PO:0001053developmental stagevascular leaf post-expansion stage
PO:0001083developmental stageinflorescence development stage
PO:0001094developmental stageplant embryo coleoptilar stage
PO:0001095developmental stageplant embryo true leaf formation stage
PO:0001180developmental stageplant proembryo stage
PO:0007001developmental stageearly whole plant fruit ripening stage
PO:0007003developmental stageIL.03 full inflorescence length reached stage
PO:0007006developmental stageIL.00 inflorescence just visible stage
PO:0007015developmental stageradicle emergence stage
PO:0007016developmental stagewhole plant flowering stage
PO:0007022developmental stageseed imbibition stage
PO:0007026developmental stageFL.00 first flower(s) open stage
PO:0007031developmental stagemid whole plant fruit ripening stage
PO:0007032developmental stagewhole plant fruit formation stage up to 10%
PO:0007045developmental stagecoleoptile emergence stage
PO:0007063developmental stageLP.07 seven leaves visible stage
PO:0007065developmental stageLP.05 five leaves visible stage
PO:0007072developmental stageLP.18 eighteen leaves visible stage
PO:0007094developmental stageLP.01 one leaf visible stage
PO:0007101developmental stageLP.09 nine leaves visible stage
PO:0007104developmental stageLP.15 fifteen leaves visible stage
PO:0007106developmental stageLP.03 three leaves visible stage
PO:0007112developmental stage1 main shoot growth stage
PO:0007116developmental stageLP.11 eleven leaves visible stage
PO:0007123developmental stageLP.06 six leaves visible stage
PO:0007633developmental stageendosperm development stage
PO:0021004developmental stageinflorescence initiation stage
Sequence ? help Back to Top
Protein Sequence    Length: 673 aa     Download sequence    Send to blast
MEYSSSEDEG LVGDFIDAED NTFTKNIDQG TGVMASQIHG DDPSVGSMPP VIGNELLMAA  60
DVLAKNDEPR MGMEFDSDAA ARAFYNAYAL CFGFGIRVAR SRSERRKGVE VLVMKRFVCL  120
KEGHHRKKKP VEPSNKKKRK RLSIRDGCPA MMEVVRRGPD RWVITKLVLE HTHVIVSADR  180
AREVQLHRLS GKFQEHENQL QEVRRNVFGD TNAQGLFNYF KKMQSDNSSF FFSIQVDSKN  240
YVSNAVWVDA RARMAYTYFG DAVYFDTTCS QNENMLPFAA FTGVNHHGDT VVFGCALILD  300
RTESSYGWIF ETWLTAMDSR LPFSLTTDEG KGIAAAVAKV FPQCFHRLCR WRILSRCKKR  360
LTDARTRFPG LHEELKRCVN GCDTAVIFDM LWGSILDKYG LRDDNWLQSL YEIRHKWVPA  420
YLTSFFFAEL SLTHRVETVS KFYRNNFSSR VSLNTFISRF DQYIDGLYAS EAQKDITSFS  480
PEQFLKTDMV LEKQARSIYT RAAFETFQLE LVEAMQHYAV KVQDGSYMKY YVERNGDPPT  540
RHTVFYNVAE KKAWCECCRF AFSAILCRHV LSVFLLAGVI MLPEPCITKR WTKKAKSGPE  600
LIGLNVGNGS SSPDSVASRY NDLVRDAIKC AEKGTVSAGA FRVAKEVLRK AFMDIRGHGE  660
KLCKDALRSA SSR
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1126140KKKPVEPSNKKKRKR
2127139KKPVEPSNKKKRK
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Zm.236210.0root| shoot
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G148940
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G148940_P01
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008659732.10.0PREDICTED: protein FAR1-RELATED SEQUENCE 5-like
TrEMBLK7WA820.0K7WA82_MAIZE; FAR1-domain family sequence
STRINGGRMZM2G148940_P010.0(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP1832967
Representative plantOGRP3012351
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.11e-119FAR1-related sequence 5